8J61 Chain A
High affinity nerve growth factor receptor (NTRK1)
Inactive — 0.1%DFG-outαC-inType2 · A0X
Resolution
3.05065 Å
R-value
0.209
Predicted activity confidence0.1%
Structure info
Alternate conformation—
Missing atoms9
Missing residues0
Salt bridge (KinCore)Saltbr-out
Sequence info
PDB sequence
DACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKSESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVYLDVL
UniProt reference sequence
IVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQA
Aligned reference sequence
IVLK----------------WELGEGA----------------FGKVFLAEC--HNLLPEQ-------------------------------DKMLVAVKALK--EASESA----------------------------RQDFQREAELLTML--------------------------QHQHIVRFFGVCTEGR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLLMVFEYMRH--------------GDLNRFLRS--HGPDAKLLAGGEDVAPG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLGLGQLLAVASQVAAGMVYLAGL---------------------------------------------HFVHRDL-----ATRNCLVGQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLVVKIGDFGMSRDIYSTDYY--RVG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRTMLPIRWMPPESILY--------------------------------RKFT-TESDVWSFGVVLWEIFTY--G--------------KQPWYQ--------------------------------------------------LSNTEAIDCITQG--RELERPRACP-----------------------------------------------------------------------------------------------------PEVYAIMRGCWQREPQQRHS--------------IKDVHARLQA
Shaded segments mark residues present in the UniProt reference but not resolved in this structure.
Projected alignment
IVLK----------------WELGEGA----------------FGKVFLAEC--HNLLPEQ-------------------------------DKMLVAVKALK----SESA----------------------------RQDFQREAELLTML--------------------------QHQHIVRFFGVCTEGR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLLMVFEYMRH--------------GDLNRFLRS--HGPD----AGGEDVAPG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLGLGQLLAVASQVAAGMVYLAGL---------------------------------------------HFVHRDL-----ATRNCLVGQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLVVKIGDFGMSRDIYSTDYY--RVG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRTMLPIRWMPPESILY--------------------------------RKFT-TESDVWSFGVVLWEIFTY--G--------------KQPWYQ--------------------------------------------------LSNTEAIDCITQG--RELERPRACP-----------------------------------------------------------------------------------------------------PEVYAIMRGCWQREPQQRHS--------------IKDVHARLQA
Activation segment
DFGMSRDIYSTDYY--RVG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRTMLPIRWMPPE
Binding pocket
WELGEGAFGKVFLVAVKALDFQREAELLTMLQQHIVRFFGVLMVFEYMRHGDLNRFLRSYLAGLHFVHRDLATRNCLVIGDFGMS
Ligand info
Orthosteric ligand
A0X
Allosteric ligand
None
Ligand typeType2
Consensus conformation
DFG conformationout
αC-helix conformationin
Predicted activityinactive
KinaDB — structure detail · data from Browse_each_pdb_structure.csv · PDB 8J61, Chain A