6B2E Chain A
5'-AMP-activated protein kinase catalytic subunit alpha-2 (PRKAA2)
Active — 97.2%DFG-inαC-inType1,Allosteric · STU
Resolution
3.8 Å
R-value
0.246
Predicted activity confidence97.2%
Structure info
Alternate conformation—
Missing atoms55
Missing residues0
Salt bridge (KinCore)Saltbr-none
Sequence info
PDB sequence
GRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQGLPSYLFPEDPSYDANVIDDEAVKEVCEKFECTESEVMNSLYSGDPQAYHLIIDNRRIMNQASEFYLASSPLKPHPERMPPLIAKKAKWHLGIRSQSKPYDIMAEVYRAMKQLDFEWKVVNAYHLRVRRKNPVTGNYVKMSLQLYLVDNRSYLLDFKSIDDLGSHTMDFFEMCASLITTLA
UniProt reference sequence
YVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWF
Aligned reference sequence
YVLG----------------DTLGVGT----------------FGKVKIGEH--QL------------------------------------TGHKVAVKILN--RQKIRSLDV-------------------------VGKIKREIQNLKLF--------------------------RHPHIIKLYQVISTPT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DFFMVMEYVSG--------------GELFDYICK--HG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVEEMEARRLFQQILSAVDYCHRH---------------------------------------------MVVHRDL-----KPENVLLDA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMNAKIADFGLSNMMSDGEFL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTSCGSPNYAAPEVISG--------------------------------RLYAGPEVDIWSCGVILYALLCG-----------------TLPFDD--------------------------------------------------EHVPTLFKKIRGG--VFYIPEYLN------------------------------------------------------------------------------------------------------RSVATLLMHMLQVDPLKRAT--------------IKDIREHEWF
Shaded segments mark residues present in the UniProt reference but not resolved in this structure.
Projected alignment
YVLG----------------DTLGVGT----------------FGKVKIGEH--QL------------------------------------TGHKVAVKILN--RQKIRSLDV-------------------------VGKIKREIQNLKLF--------------------------RHPHIIKLYQVISTPT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DFFMVMEYVSG--------------GELFDYICK--HG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVEEMEARRLFQQILSAVDYCHRH---------------------------------------------MVVHRDL-----KPENVLLDA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMNAKIADFGLSNMMSDGEFL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R-SCGSPNYAAPEVISG--------------------------------RLYAGPEVDIWSCGVILYALLCG-----------------TLPFDD--------------------------------------------------EHVPTLFKKIRGG--VFYIPEYLN------------------------------------------------------------------------------------------------------RSVATLLMHMLQVDPLKRAT--------------IKDIREHEWF
Activation segment
DFGLSNMMSDGEFL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R-SCGSPNYAAPE
Binding pocket
DTLGVGTFGKVKIVAVKILKIKREIQNLKLFRPHIIKLYQVFMVMEYVSGGELFDYICKYCHRHMVVHRDLKPENVLLIADFGLS
Ligand info
Orthosteric ligand
STU
Allosteric ligand
CG7
Ligand typeType1,Allosteric
Consensus conformation
DFG conformationin
αC-helix conformationin
Predicted activityactive
KinaDB — structure detail · data from Browse_each_pdb_structure.csv · PDB 6B2E, Chain A