5TOB Chain A
Protein-tyrosine kinase 2-beta (PTK2B)
Inactive — 0.0%DFG-inαC-inType1 · YAM
Resolution
2.12 Å
R-value
0.212
Predicted activity confidence0.0%
Structure info
Alternate conformation—
Missing atoms16
Missing residues2
Salt bridge (KinCore)Saltbr-none
Sequence info
PDB sequence
IAREDVVLNRILGEGFFGEVYEGVYTHKGEKINVAVKTCKDNKEKFMSEAVIMKNLDHPHIVKLIGIIEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEKDIA
UniProt reference sequence
VVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSD
Aligned reference sequence
VVLN----------------RILGEGF----------------FGEVYEGVY--TNHKG---------------------------------EKINVAVKTCK--KDCTLDN---------------------------KEKFMSEAVIMKNL--------------------------DHPHIVKLIGIIEEE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PTWIIMELYPY--------------GELGHYLER--NKN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLKVLTLVLYSLQICKAMAYLESI---------------------------------------------NCVHRDI-----AVRNILVAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PECVKLGDFGLSRYIEDEDYY--KA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SVTRLPIKWMSPESINF--------------------------------RRFT-TASDVWMFAVCMWEILSF--G--------------KQPFFW--------------------------------------------------LENKDVIGVLEKG--DRLPKPDLCP-----------------------------------------------------------------------------------------------------PVLYTLMTRCWDYDPSDRPR--------------FTELVCSLSD
Shaded segments mark residues present in the UniProt reference but not resolved in this structure.
Projected alignment
VVLN----------------RILGEGF----------------FGEVYEGVY--T-HKG---------------------------------EKINVAVKTCK-------DN---------------------------KEKFMSEAVIMKNL--------------------------DHPHIVKLIGII--E---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PTWIIMELYPY--------------GELGHYLER--NKN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLKVLTLVLYSLQICKAMAYLESI---------------------------------------------NCVHRDI-----AVRNILVAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PECVKLGDFG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIKWMSPESINF--------------------------------RRFT-TASDVWMFAVCMWEILSF--G--------------KQPFFW--------------------------------------------------LENKDVIGVLEKG--DRLPKPDLCP-----------------------------------------------------------------------------------------------------PVLYTLMTRCWDYDPSDRPR--------------FTELVCSLSD
Activation segment
DFG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIKWMSPE
Binding pocket
RILGEGFFGEVYEVAVKTCKFMSEAVIMKNLDPHIVKLIGIWIIMELYPYGELGHYLERYLESINCVHRDIAVRNILVLGDFG__
Ligand info
Orthosteric ligand
YAM
Allosteric ligand
None
Ligand typeType1
Consensus conformation
DFG conformationin
αC-helix conformationin
Predicted activityinactive
KinaDB — structure detail · data from Browse_each_pdb_structure.csv · PDB 5TOB, Chain A