4TYH Chain A
MAP kinase-activated protein kinase 2 (MAPKAPK2)
Active — 50.2%DFG-inαC-in
Resolution
3.0 Å
R-value
0.232
Predicted activity confidence50.2%
Structure info
Alternate conformationA
Missing atoms0
Missing residues0
Salt bridge (KinCore)Saltbr-out
Sequence info
PDB sequence
GLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDASNPLLLKRRKKARALEAAALAH
UniProt reference sequence
YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWI
Aligned reference sequence
YKVT--S-------------QVLGLGI----------------NGKVLQIFN--KR------------------------------------TQEKFALKMLQ--D---------------------------------CPKARREVELHWRA--S-----------------------QCPHIVRIVDVYENLY--AGRK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLLIVMECLDG--------------GELFSRIQD--RGDQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AFTEREASEIMKSIGEAIQYLHSI---------------------------------------------NIAHRDV-----KPENLLYTS--KRP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NAILKLTDFGFAKETTSHNSL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTPCYTPYYVAPEVLGP--------------------------------EKYD-KSCDMWSLGVIMYILLCG-----------------YPPFYS--NHGL--------------------------------------------AISPGMKTRIRMG--QYEFPNPEWSEVS--------------------------------------------------------------------------------------------------EEVKMLIRNLLKTEPTQRMT--------------ITEFMNHPWI
Shaded segments mark residues present in the UniProt reference but not resolved in this structure.
Projected alignment
YKVT--S-------------QVLGLGI----------------NGKVLQIFN--KR------------------------------------TQEKFALKMLQ--D---------------------------------CPKARREVELHWRA--S-----------------------QCPHIVRIVDVYENLY--AGRK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLLIVMECLDG--------------GELFSRIQD--RGDQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AFTEREASEIMKSIGEAIQYLHSI---------------------------------------------NIAHRDV-----KPENLLYTS--KRP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NAILKLTDFGFAKETTSHNSL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTPCYTPYYVAPEVLGP--------------------------------EKYD-KSCDMWSLGVIMYILLCG-----------------YPPFYS--NHG-------------------------------------------------------RMG--QYEFPNPEWSEVS--------------------------------------------------------------------------------------------------EEVKMLIRNLLKTEPTQRMT--------------ITEFMNHPWI
Activation segment
DFGFAKETTSHNSL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTPCYTPYYVAPE
Binding pocket
QVLGLGINGKVLQFALKMLKARREVELHWRASPHIVRIVDVLIVMECLDGGELFSRIQDYLHSINIAHRDVKPENLLYLTDFGFA
Ligand info
Orthosteric ligand
None
Allosteric ligand
None
Ligand typeNo_ligand
Consensus conformation
DFG conformationin
αC-helix conformationin
Predicted activityactive
KinaDB — structure detail · data from Browse_each_pdb_structure.csv · PDB 4TYH, Chain A